Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
images{:bash}
:file
Overlapping tile image data in formats from most commercial microscopes
*.{ome.tiff,ome.tif,rcpnl,btf,nd2,tiff,tif,czi}
opt_dfp{:bash}
Optional dark field image data
opt_ffp{:bash}
Optional flat field image data
tif{:bash}
*.ome.tif{:bash}
A pyramidal, tiled OME-TIFF file created from input images.
*.ome.tif
versions_ashlar{:bash}
${task.process}{:bash}
:string
The name of the process
ashlar{:bash}
The name of the tool
ashlar --version | sed 's/^.*ashlar //'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
