Assembly summary statistics in JSON format
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
assembly{:bash}
:file
FASTA file for a given assembly
*.fasta
report{:bash}
*.{json,tsv}{:bash}
Assembly statistics in tsv or JSON format
*.{json,tsv}
versions_assemblyscan{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
assemblyscan{:bash}
The tool name
assembly-scan --version 2>&1 | sed 's/^.*assembly-scan //; s/Using.*\$//'{:bash}
The command used to generate the version of the tool
versions{:bash}
