Render an assembly graph in GFA 1.0 format to PNG and SVG image formats
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gfa{:bash}
:file
Assembly graph in GFA 1.0 format
*.gfa
png{:bash}
*.png{:bash}
Bandage image in PNG format
*.png
svg{:bash}
*.svg{:bash}
Bandage image in SVG format
*.svg
versions_bandage{:bash}
${task.process}{:bash}
:string
The name of the process
bandage{:bash}
The name of the tool
export QT_QPA_PLATFORM=offscreen; Bandage --version 2>&1| grep Version | sed "s/^Version: //"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
