Concatenate VCF files
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcfs{:bash}
:list
List containing 2 or more vcf files e.g. [ ‘file1.vcf’, ‘file2.vcf’ ]
tbi{:bash}
List containing 2 or more index files (optional) e.g. [ ‘file1.tbi’, ‘file2.tbi’ ]
vcf{:bash}
${prefix}.${extension}{:bash}
*.{vcf,vcf.gz,bcf,bcf.gz}
${prefix}.${extension}.tbi{:bash}
*.tbi
csi{:bash}
${prefix}.${extension}.csi{:bash}
*.csi
versions_bcftools{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
bcftools{:bash}
The tool name
bcftools --version | sed '1!d; s/^.*bcftools //'{:bash}
The command used to generate the version of the tool
versions{:bash}
Concatenate VCF files.
