Compresses VCF files
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
vcf{:bash}
:file
VCF file
*.{vcf}
tbi{:bash}
tabix index file
*.{tbi}
fasta{:bash}
FASTA reference file
*.{fasta,fa}
mask{:bash}
BED file used for masking
*.{bed}
*.fa{:bash}
FASTA reference consensus file
versions_bcftools{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
bcftools{:bash}
The tool name
bcftools --version | sed '1!d; s/^.*bcftools //'{:bash}
The command used to generate the version of the tool
versions{:bash}
Create consensus sequence by applying VCF variants to a reference fasta file.
