extract sequences in a FASTA file based on intervals defined in a feature file.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed{:bash}
:file
Bed feature file
*.{bed}
fasta{:bash}
Input fasta file
*.{fa,fasta}
*.fa{:bash}
Output fasta file with extracted sequences
*.{fa}
versions_bedtools{:bash}
${task.process}{:bash}
:string
The name of the process
bedtools{:bash}
The name of the tool
bedtools --version | sed -e 's/bedtools v//g'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
