Sorts a feature file by chromosome and other criteria.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
intervals{:bash}
:file
BED/BEDGRAPH
*.{bed|bedGraph}
genome_file{:bash}
Optional reference genome 2 column file that defines the expected chromosome order.
*.{fai,txt,chromsizes}
sorted{:bash}
*.${extension}{:bash}
Sorted output file
*.${extension}
versions_bedtools{:bash}
${task.process}{:bash}
:string
The name of the process
bedtools{:bash}
The name of the tool
bedtools --version | sed -e 's/bedtools v//g'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
