Description

Builds a BLAST database

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fasta{:bash}

:file

Input fasta file

*.{fa,fasta,fa.gz,fasta.gz}

Output

name:type
description
pattern

db{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}{:bash}

:directory

Output directory containing blast database files

*

versions_makeblastdb{:bash}

${task.process}{:bash}

:string

The name of the process

makeblastdb{:bash}

:string

The name of the tool

makeblastdb -version 2>&1 | sed 's/^.*makeblastdb: //; s/ .*\$//'{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

makeblastdb{:bash}

:string

The name of the tool

makeblastdb -version 2>&1 | sed 's/^.*makeblastdb: //; s/ .*\$//'{:bash}

:eval

The expression to obtain the version of the tool

Tools

blast
US-Government-Work

BLAST finds regions of similarity between biological sequences.