The BUSCO lineage to use, or “auto”, “auto_prok” or “auto_euk” to automatically select lineage
Output
name:type
description
pattern
download_dir{:bash}
busco_downloads{:bash}
:file
Directory with busco database
busco_downloads
versions_busco{:bash}
${task.process}{:bash}
:string
The name of the process
busco{:bash}
:string
The name of the tool
busco --version 2> /dev/null | sed 's/BUSCO //g'{:bash}
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions{:bash}
${task.process}{:bash}
:string
The name of the process
busco{:bash}
:string
The name of the tool
busco --version 2> /dev/null | sed 's/BUSCO //g'{:bash}
:eval
The expression to obtain the version of the tool
Tools
busco
MIT
BUSCO provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB.
