Description

Create BWA index for reference genome

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing reference information. e.g. [ id:‘test’, single_end:false ]

fasta{:bash}

:file

Input genome fasta file

Output

name:type
description
pattern

index{:bash}

meta{:bash}

:map

Groovy Map containing reference information. e.g. [ id:‘test’, single_end:false ]

bwa{:bash}

:map

Groovy Map containing reference information. e.g. [ id:‘test’, single_end:false ]

*.{amb,ann,bwt,pac,sa}

versions_bwa{:bash}

${task.process}{:bash}

:string

The process the versions were collected from

bwa{:bash}

:string

The tool name

bwa 2>&1 | sed -n "s/^Version: //p"{:bash}

:string

The command used to generate the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The process the versions were collected from

bwa{:bash}

:string

The tool name

bwa 2>&1 | sed -n "s/^Version: //p"{:bash}

:string

The command used to generate the version of the tool

Tools

bwa
GPL-3.0-or-later

BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome.