Generate fragment-delimited genomic bins
fasta{:bash}
:file
Genome assembly FASTA file or folder containing FASTA files (uncompressed).
*.{fasta,fa}
chromsizes{:bash}
Path to a chromsizes file.
enzyme{:bash}
:string
Name of restriction enzyme. e.g. CviQI.
bed{:bash}
*.bed{:bash}
A genome segmentation of restriction fragments as a BED file.
*.{bed}
versions_cooler{:bash}
${task.process}{:bash}
The name of the process
cooler{:bash}
The name of the tool
cooler --version 2>&1 | sed "s/cooler, version //"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Sparse binary format for genomic interaction matrices
