Call variants from the examples produced by make_examples
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
make_examples_tfrecords{:bash}
:file
The actual sharded input files, from DEEPVARIANT_MAKEEXAMPLES process
*.gz
call_variants_tfrecords{:bash}
:list
Each output contains: unique ID string from input channel, meta, tfrecord file with variant calls.
${prefix}.call-*-of-*.tfrecord.gz{:bash}
versions_deepvariant{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
deepvariant{:bash}
The tool name
/opt/deepvariant/bin/run_deepvariant --version | sed 's/^.*version //'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data
