Run falco on sequenced reads
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
html{:bash}
*.html{:bash}
FastQC like report
*_{fastqc_report.html}
txt{:bash}
*.txt{:bash}
falco report data
*_{data.txt}
versions_falco{:bash}
${task.process}{:bash}
:string
The name of the process
falco{:bash}
The name of the tool
falco --version | sed '1!d;s/.* //'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
falco is a drop-in C++ implementation of FastQC to assess the quality of sequence reads.
