Build fastq screen config file from bowtie index files
Input
name:type
description
pattern
genome_names{:bash}
:string
List of names for each index
indexes{:bash}
:directory
Bowtie2 genome directories containing index files
Output
name:type
description
pattern
database{:bash}
FastQ_Screen_Genomes{:bash}
:directory
fastq screen database folder containing config file and index folders
FastQ_Screen_Genomes
versions_fastqscreen{:bash}
${task.process}{:bash}
:string
The name of the process
fastqscreen{:bash}
:string
The name of the tool
fastq_screen --version 2>&1 | sed "s/^.*FastQ Screen v//;"{:bash}
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions{:bash}
${task.process}{:bash}
:string
The name of the process
fastqscreen{:bash}
:string
The name of the tool
fastq_screen --version 2>&1 | sed "s/^.*FastQ Screen v//;"{:bash}
:eval
The expression to obtain the version of the tool
Tools
fastqscreen
GPL-3.0-or-later
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.
