Groovy Map containing reference information
e.g. [ id:‘test’ ]
fasta{:bash}
:file
genome fasta file
*.{fasta}
Output
name:type
description
pattern
index{:bash}
meta{:bash}
:map
Groovy Map containing reference information
e.g. [ id:‘test’ ]
kallisto{:bash}
:directory
Kallisto genome index
*.idx
versions_kallisto{:bash}
${task.process}{:bash}
:string
The name of the process
kallisto{:bash}
:string
The name of the tool
kallisto 2>&1 | head -1 | sed "s/^kallisto //; s/Usage.*//"{:bash}
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions{:bash}
${task.process}{:bash}
:string
The name of the process
kallisto{:bash}
:string
The name of the tool
kallisto 2>&1 | head -1 | sed "s/^kallisto //; s/Usage.*//"{:bash}
:eval
The expression to obtain the version of the tool
Tools
kallisto
BSD-2-Clause
Quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
