Makes a dotplot (Oxford Grid) of pair-wise sequence alignments
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
maf{:bash}
:file
Multiple Alignment Format (MAF) file, compressed with gzip
*.{maf.gz}
annot_b{:bash}
Annotation file in BED, Repeamasker, genePred or AGP format for the second (vertical) sequence
*.{bed,bed.gz,out,out.gz,rmsk.txt,rmsk.txt.gz,genePred,genePred.gz,gff,gff.gz,gtf,gtf.gz,gap.txt,gap.txt.gz}
meta2{:bash}
Groovy Map containing sample information e.g. [ id:'sample2', single_end:false ]
[ id:'sample2', single_end:false ]
annot_a{:bash}
Annotation file in BED, Repeamasker, genePred or AGP format for the first (horizontal) sequence
format{:bash}
:string
Output format (PNG or GIF).
filter{:bash}
:boolean
Remove isolated alignments using the maf-linked software.
maf-linked
plot{:bash}
*.{gif,png}{:bash}
Pairwise alignment dot plot image, in GIF or PNG format.
*.{gif,png}
versions_last{:bash}
${task.process}{:bash}
The name of the process
last{:bash}
The name of the tool
lastal --version | sed 's/lastal //'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
LAST finds & aligns related regions of sequences.
