Prepare sequences for subsequent alignment with lastal.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
fastx{:bash}
:file
Sequence file in FASTA or FASTQ format. May be compressed with gzip.
*.{fasta,fasta.gz,fastq,fastq.gz}
index{:bash}
lastdb{:bash}
:directory
directory containing the files of the LAST index
lastdb/
versions_last{:bash}
${task.process}{:bash}
:string
The name of the process
last{:bash}
The name of the tool
lastal --version | sed 's/lastal //'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
LAST finds & aligns related regions of sequences.
