Description

Provides fasta index required by minimap2 alignment.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fasta{:bash}

:file

Reference database in FASTA format.

Output

name:type
description
pattern

index{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.mmi{:bash}

:file

Minimap2 fasta index.

*.mmi

versions_minimap2{:bash}

${task.process}{:bash}

:string

The name of the process

minimap2{:bash}

:string

The name of the tool

minimap2 --version{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

minimap2{:bash}

:string

The name of the tool

minimap2 --version{:bash}

:eval

The expression to obtain the version of the tool

Tools

minimap2
MIT

A versatile pairwise aligner for genomic and spliced nucleotide sequences.