Description

Creates sequence index for mmseqs database

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

db{:bash}

:directory

Directory containing the DB to be indexed

*

Output

name:type
description
pattern

db_indexed{:bash}

meta{:bash}

:directory

Directory containing the DB and the generated indexes

*

db{:bash}

:directory

Directory containing the DB and the generated indexes

*

versions_mmseqs{:bash}

${task.process}{:bash}

:string

The name of the process

mmseqs{:bash}

:string

The name of the tool

mmseqs version{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

mmseqs{:bash}

:string

The name of the tool

mmseqs version{:bash}

:eval

The expression to obtain the version of the tool