Render a Quarto notebook, including parametrization.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ].
[ id:'sample1', single_end:false ]
notebook{:bash}
:file
The Quarto notebook to be rendered.
*.{qmd}
parameters{:bash}
Groovy map with notebook parameters which will be passed to Quarto to generate parametrized reports.
input_files{:bash}
One or multiple files serving as input data for the notebook.
*
extensions{:bash}
A quarto _extensions directory with custom template(s) to be available for rendering.
_extensions
html{:bash}
*.html{:bash}
HTML report generated by Quarto.
*.html
The Quarto notebook that was rendered. Allows user to continue working on the notebook.
params_yaml{:bash}
params.yml{:bash}
Parameters used during report rendering.
artifacts{:bash}
${notebook_parameters.artifact_dir}/*{:bash}
Artifacts generated during report rendering.
_extensions{:bash}
Quarto extensions used during report rendering.
versions_quarto{:bash}
${task.process}{:bash}
:string
The name of the process
quarto{:bash}
The name of the tool
quarto -v{:bash}
:eval
The expression to obtain the version of the tool
versions_papermill{:bash}
papermill{:bash}
papermill --version | cut -f1 -d" "{:bash}
versions{:bash}
An open-source scientific and technical publishing system.
Parameterize, execute, and analyze notebooks
