Transcript assembly and quantification for RNA-Se
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
Stringtie transcript gtf output(s).
annotation_gtf{:bash}
Annotation gtf file (optional).
transcript_gtf{:bash}
*.transcripts.gtf{:bash}
transcript gtf
*.{transcripts.gtf}
abundance{:bash}
*.abundance.txt{:bash}
abundance
*.{abundance.txt}
coverage_gtf{:bash}
*.coverage.gtf{:bash}
coverage gtf
*.{coverage.gtf}
ballgown{:bash}
*.ballgown{:bash}
for running ballgown
*.{ballgown}
versions_stringtie{:bash}
${task.process}{:bash}
:string
The name of the process
stringtie{:bash}
The name of the tool
stringtie --version{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Transcript assembly and quantification for RNA-Seq
