bgzip a sorted tab-delimited genome file and then create tabix index
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
input{:bash}
:file
Sorted tab-delimited genome file
gz_index{:bash}
*.gz{:bash}
bgzipped tab-delimited genome file
*.gz
*.{tbi,csi}{:bash}
Tabix index file (either tbi or csi)
*.{tbi,csi}
versions_tabix{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
tabix{:bash}
The tool name
tabix -h 2>&1 | grep -oP 'Version:\s*\K[^\s]+'{:bash}
:eval
The expression to obtain the version of the tool
versions_bgzip{:bash}
bgzip{:bash}
bgzip --version | sed '1!d;s/.* //'{:bash}
versions{:bash}
Generic indexer for TAB-delimited genome position files.
