Description

Convert a bedGraph file to bigWig format.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bedgraph{:bash}

:file

bedGraph file

*.{bedGraph}

sizes{:bash}

:file

chromosome sizes file

*.{sizes}

Output

name:type
description
pattern

bigwig{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.bigWig{:bash}

:file

bigWig file

*.{bigWig}

versions_ucsc{:bash}

${task.process}{:bash}

:string

The process the versions were collected from

ucsc{:bash}

:string

The tool name

echo $VERSION{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The process the versions were collected from

ucsc{:bash}

:string

The tool name

echo $VERSION{:bash}

:eval

The expression to obtain the version of the tool

Tools

ucsc
varies; see http://genome.ucsc.edu/license

Convert a bedGraph file to bigWig format.