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nf-core/seqinspector
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Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The pipeline is targeting core facilities or research groups with larger sequencing throughput.

genomicsquality-control
This is the development version of the pipeline.
Launch development version https://github.com/nf-core/seqinspector
  • Introduction
  • Usage
  • Parameters
  • Output
    • dev
Introduction Usage Parameters Output
  • dev
run with
See the docs on how to configure the Seqera Platform CLI.
  • nf-core
  • Nextflow
  • Seqera Platform
subscribers
174
stars
19
open issues
37
open PRs
9
last release
not yet released
last update
about 5 hours ago
included modules
bowtie2_buildbwamem2_indexbwamem2_memfastqcfastqscreen_buildfromindex and 9 more modules
included subworkflows
utils_nextflow_pipelineutils_nfcore_pipelineutils_nfschema_plugin
contributors
Github user kedhammar
Github user maxulysse
Github user Aratz
Github user agrima2010
Github user FranBonath
Github user nggvs
Github user pontushojer
Github user mahesh-panchal
Github user edmundmiller
Github user matrulda
Github user beatrizsavinhas
Github user eliottBo
Github user KarNair
Github user Patricie34
Github user nkongenelly
Github user ctuni
Github user alneberg
Github user rannick
Github user adamrtalbot
Github user ramprasadn
Github user MatthiasZepper
get help
Ask a question on Slack Open an issue on GitHub

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